The Hyperion Logistics System is supposed to decrease the logistics cost for every newly build ship by 1 point. But the logistics cost of those ships are not lower than the ships build before the Hyperion Logistics System was build.
The Hyperion Supply System is supposed to give newly build ships an additional range of 10%, and it does not.
I could not find a solution in the xml (and i tried a lot of combinations), therefor i have got a feeling that the entire OnConstructShip system fails to work.
Snip from ImprovementDefs.xml:
...
<Triggers>
<OnEvent>OnConstructShip</OnEvent>
<Target>
<TargetType>Ship</TargetType>
</Target>
<Lifetime>Target</Lifetime>
...
Furthermore the Lifetime is set to "Target" for the base effect, while it is set to "Instant" for the level effect triggers. I think they both should be the same.