a stealth ability would be cool for a scout.
yes, there are a lot of standard stat-buff techs but most units have a unique researchable special ability. light frigates have different anti-matter affecting abilities. The Javelis can get splash damage cluster missiles and Illuminators can get an illusion/decoy ability. Vasari have phase missiles on various units and their Assailant can discharge missiles at the expense of turning fast. The support cruisers are actually pretty different with their base abilities even though some do tend to share different flavors of repair/impair.
I don't think flak frigates have special abilities, perhaps they should.
Suggestions: TEC Garda - avionics scrambler - affected strike craft lose the ability to steer and just keep going straight for a bit.
Advent Defense Vessel - Telekinetic Clutch - affected strike craft slow down for a bit, chance to dodge decreases
Vasari Sentinel - Phase-Off - affected strike craft are teleported across the grav well
If these are OP, maybe they could just affect bombers since flak weapons already chew through fighters.